2026

Björn Schreiweis, Benjamin Kinast, Hannes Ulrich, Tobias Bronsch, Ann-Kristin Kock-Schoppenhauer, and Björn Bergh,
A Data-Centric Approach for Health Care and Research in a Health Knowledge Management Platform: Implementation and Requirement-Based Evaluation Study, JMIR Medical Informatics , vol. 14, pp. e83608—e83608, Apr. 2026.
DOI:10.2196/83608
File: e83608
Julia Von Grundherr, Simon Elmers, Luisa Samland, Raika Mühlberg, Sarah Dwinger, Jannike Baumann, Barbara Koch, Franziska Wolters, Lesley-Ann Hail, Gabriele Escherich, Corinna Bergelt, Wiebke Jensen, Eik Vettorazzi, Hans Pinnschmidt, Luzia Valentini, Freerk T. Baumann, Susanne Singer, Rüdiger Reer, Claudia Metz, Gabriele Calaminus, Jörg Faber, Dana Schmidt, Thorsten Langer, Inken Hilgendorf, Michael Koehler, Alexander Puzik, Madeleine Aschhoff, Annette Sander, Lisa Schiffmann, Magdalena Sokalska-Duhme, Sonja Schuster, Ann-Kristin Kock-Schoppenhauer, Martin Smollich, Matthias Rostock, Carsten Bokemeyer, Alexander Stein, and Marianne Sinn,
Dietary intervention among young cancer survivors within the CARE for CAYA program, Journal of Cancer Survivorship , Mar. 2026.
DOI:10.1007/s11764-026-01997-4
File: s11764-026-01997-4
William Philipp, Siddarth Venkateswaran, Nina Pillen, Jawan Kolanowski, Andreas Schäffler, Bianca Greiten, Christian Himstedt, Md Ali, Tobias Bäumer, Sebastian Fudickar, and Ronald Böck,
SEPE: Towards a Patient-Empowered, AI-Supported Optimisation of Rare-Disease Diagnostics, Mar.2026. pp. 554—561.
ISBN:9789897588020
File: Link.aspx
Steffen Busse, Verena Uslar, Sebastian Fudickar, Veysel Ödemis, Sandra Hellmers, Anja U. Bräuer, Andreas Hein, and Dirk Weyhe,
Requirements for mHealth and Augmented Reality Apps for Patient Education Regarding Colorectal Cancer Surgery: Focus Group Study, JMIR Formative Research , vol. 10, no. 1, pp. e75972, Feb. 2026. JMIR Publications Inc., Toronto, Canada.
DOI:10.2196/75972
File: e75972
Tessa Ohlsen, André Sander, and Josef Ingenerf,
ECLed– a tool supporting the effective use of the SNOMED CT Expression Constraint Language, Journal of Biomedical Semantics , vol. 17, no. 1, pp. 1, Jan. 2026.
DOI:10.1186/s13326-025-00344-3
File: s13326-025-00344-3
Julius Verrel, Ronja Schappert, Nele Brügge, Tina Rawish, Tobias Bäumer, Yifan Hao, Roland Stenger, Christian Beste, Sebastian Fudickar, Veit Roessner, and Alexander Münchau,
Eye blinking abnormalities in Tourette syndrome: Blink more or blink differently?, Parkinsonism & Related Disorders , vol. 142, Jan. 2026. Elsevier.
DOI:10.1016/j.parkreldis.2025.108121
File: fulltext
Roland Stenger, Sebastian Loens, Tobias Bäumer, and Sebastian Fudickar,
Impact of Face Anonymization on Clinical Vision Systems: A Case Study on Head-Pose–Based TWSTRS Estimation in Cervical Dystonia:, in Proceedings of the 19th International Joint Conference on Biomedical Engineering Systems and Technologies , Marbella, Spain: SCITEPRESS - Science and Technology Publications, 2026. pp. 310—317.
DOI:10.5220/0014428800004070
ISBN:978-989-758-802-0
File: Link.aspx
Rica Schulze, Sabrina Schröder, Torge Jensen, Dirk Weyhe, Verena Uslar, and Sebastian Fudickar,
Towards AI-Assisted Voice Therapy: The Relevance of Facial Movements and Muscle Regions for the Recognition of Oral Facial Motor Exercises:, in Proceedings of the 19th International Joint Conference on Biomedical Engineering Systems and Technologies , Marbella, Spain: SCITEPRESS - Science and Technology Publications, 2026. pp. 364—372.
DOI:10.5220/0014620000004070
ISBN:978-989-758-802-0
File: 0014620000004070
Sebastian Loens, Roland Stenger, Feline Hamami, Alexander Münchau, Theresa Paulus, Anne Weissbach, Gesine M. Sallandt, Tatiana Usnich, Max Borsche, Martje G. Pauly, Lara M. Lange, Markus A. Hobert, Rebecca Herzog, Ana Luísa de Almeida Marcelino, Tina Mainka, Friederike Schumann, Lukas L. Goede, Johanna Reimer, Kirsten E. Zeuner, Julienne Haas, Jos Becktepe, Alexander Baumann, Robin Wolke, Chi Wang Ip, Thorsten Odorfer, Daniel Zeller, Lisa Harder-Rauschenberger, John-Ih Lee, Philipp Albrecht, Petyo Nikolov, Tristan Kölsche, Joachim K. Krauss, Johanna M. Nagel, Joachim Runge, Jessica Utermarck, Katja Kollewe, Johanna Doll-Lee, Johanne Heine, Linda Veith Sanches, Simone Zittel, Kai Grimm, Pawel Tacik, André Lee, Andrea Henze, Sebastian Fudickar, and Tobias Bäumer,
Validation of clinical ratings of cervical dystonia using computer-generated avatars, Parkinsonism & Related Disorders , vol. 142, Jan. 2026. Elsevier.
DOI:10.1016/j.parkreldis.2025.107975
File: fulltext

2025

Joshua Wiedekopf, Tessa Ohlsen, Ann-Kristin Kock-Schoppenhauer, and Josef Ingenerf,
BabelFSH—a toolkit for an effective HL7 FHIR-based terminology provision, Journal of Biomedical Semantics , Nov. 2025.
DOI:10.1186/s13326-025-00343-4
File: s13326-025-00343-4
Roland Stenger, Hawzhin Hozhabr Pour, Jonas Teich, Andreas Hein, and Sebastian Fudickar,
Gait Event Detection and Gait Parameter Estimation from a Single Waist-Worn IMU Sensor, Sensors , vol. 25, no. 20, Oct. 2025. Multidisciplinary Digital Publishing Institute.
DOI:10.3390/s25206463
File: 6463
Tessa Ohlsen, Simon Müller, and Josef Ingenerf,
Covhisto: A Web Application for Cross-Version Visualization and Analysis of ICD-10-GM and OPS, in Studies in {Health} {Technology} and {Informatics} , Röhrig, Rainer and Ganslandt, Thomas and Jung, Klaus and Kock-Schoppenhauer, Ann-Kristin and König, Jochem and Sax, Ulrich and Sedlmayr, Martin and Spreckelsen, Cord and Zapf, Antonia, Eds. IOS Press, Sep.2025.
DOI:10.3233/SHTI251394
ISBN:978-1-64368-615-8
File: SHTI251394
Anke Neumann, Torge Ablaß, Ann-Kristin Kock-Schoppenhauer, Hauke Busch, Josef Ingenerf, and Niklas Reimer,
Extension of the cBioPortal System to Include a Site-Centered Clinical Trial Search at the University Hospital Schleswig-Holstein, in Studies in Health Technology and Informatics , Röhrig, Rainer and Ganslandt, Thomas and Jung, Klaus and Kock-Schoppenhauer, Ann-Kristin and König, Jochem and Sax, Ulrich and Sedlmayr, Martin and Spreckelsen, Cord and Zapf, Antonia, Eds. IOS Press, Sep.2025.
DOI:10.3233/SHTI251399
ISBN:978-1-64368-615-8
File: SHTI251399
Joshua Wiedekopf, Tessa Ohlsen, Alan Koops, Ann-Kristin Kock-Schoppenhauer, Muhammad Adnan, Sarah Ballout, Nele Philipzik, Oya Beyan, Andreas Beyer, Michael Marschollek, and Josef Ingenerf,
Implementation of HL7 FHIR-Based Terminology Services for a National Federated Health Research Infrastructure, SHTI , Sep. 2025.
DOI:10.3233/SHTI251396
File: SHTI251396
Tessa Ohlsen, Anke Neumann, Josef Ingenerf, and Niklas Reimer,
Mapping ICD-10 Codes for Oncology Diseases to OncoTree: Lessons Learned, in Studies in Health Technology and Informatics , Househ, Mowafa S. and Tariq, Zain Ul Abideen and Al-Zubaidi, Mahmood and Shah, Uzair and Huesing, Elaine, Eds. IOS Press, Aug.2025.
DOI:10.3233/SHTI250796
ISBN:978-1-64368-608-0
File: SHTI250796
Rica Schulze, Sabrina Schröder, Dirk Weyhe, Verena Uslar, and Sebastian Fudickar,
Method to Determine Most Sensitive and Accurate Mediapipe Face-Mesh Keypoints for Speech Therapy Exercises, in Proceedings of the 18th ACM International Conference on PErvasive Technologies Related to Assistive Environments , New York, NY, USA: Association for Computing Machinery, Jul.2025. pp. 190—193.
DOI:10.1145/3733155.3733207
ISBN:979-8-4007-1402-3
File: 3733155.3733207
Dominik Boehm, Niklas Reimer, Jan Christoph, Alexander Scheiter, and Philipp Unberath,
Building a Knowledge Base for Variant Annotation Using Therapy Recommendations in cBioPortal, in Studies in Health Technology and Informatics , Andrikopoulou, Elisavet and Gallos, Parisis and Arvanitis, Theodoros N. and Austin, Rosalynn and Benis, Arriel and Cornet, Ronald and Chatzistergos, Panagiotis and Dejaco, Alexander and Dusseljee-Peute, Linda and Mohasseb, Alaa and Natsiavas, Pantelis and Nakkas, Haythem and Scott, Philip, Eds. IOS Press, May2025.
DOI:10.3233/SHTI250281
ISBN:978-1-64368-596-0
File: SHTI250281
[eng] C. Cytera, K. Baust, A. Borgmann-Staudt, G. Calaminus, K. Egger-Heidrich, J. Faber, D. Grabow, T. Halbsguth, A. Kock-Schopenhauer, I. R. König, S. Michaelis, A. Neumann, A. Puzik, S. Schuster, F. Wolters, C. Arendt, M. Sleimann, T. Langer, and J. Gebauer,
Evaluation and implementation of multidisciplinary, standardized, guideline-based long-term follow-up care for adult survivors of childhood cancer in Germany: protocol of a prospective, multi-center, nationwide study (LE-Na), BMC cancer , vol. 25, no. 1, pp. 921, May 2025.
DOI:10.1186/s12885-025-14355-x
Tessa Ohlsen, Josef Ingenerf, and Joshua Wiedekopf,
Generating a FHIR ConceptMap from WHO’s ICD-10 to ICD-11 Mapping Tables, in Studies in Health Technology and Informatics , Andrikopoulou, Elisavet and Gallos, Parisis and Arvanitis, Theodoros N. and Austin, Rosalynn and Benis, Arriel and Cornet, Ronald and Chatzistergos, Panagiotis and Dejaco, Alexander and Dusseljee-Peute, Linda and Mohasseb, Alaa and Natsiavas, Pantelis and Nakkas, Haythem and Scott, Philip, Eds. IOS Press, May2025.
DOI:10.3233/SHTI250614
ISBN:978-1-64368-596-0
File: SHTI250614
Jan Bossenz, Iryna Manuilova, Annemarie Bianka Weise, Susann Schulze, Sonja Hiemer, Markus Eszlinger, Melanie Boerries, Hauke Busch, Dominik Boehm, Philipp Unberath, Niklas Reimer, Cosima Strantz, and Jan Christoph,
Prototypical Visualization of Patient Similarities in cBioPortal to Enhance Decision-Making in Molecular Tumor Boards, in Studies in Health Technology and Informatics , Andrikopoulou, Elisavet and Gallos, Parisis and Arvanitis, Theodoros N. and Austin, Rosalynn and Benis, Arriel and Cornet, Ronald and Chatzistergos, Panagiotis and Dejaco, Alexander and Dusseljee-Peute, Linda and Mohasseb, Alaa and Natsiavas, Pantelis and Nakkas, Haythem and Scott, Philip, Eds. IOS Press, May2025.
DOI:10.3233/SHTI250385
ISBN:978-1-64368-596-0
File: SHTI250385
Joshua Wiedekopf, Tessa Ohlsen, Jan Schladetzky, Julian Sass, and Josef Ingenerf,
The Terminology Server Challenge 2023, in Studies in Health Technology and Informatics , Andrikopoulou, Elisavet and Gallos, Parisis and Arvanitis, Theodoros N. and Austin, Rosalynn and Benis, Arriel and Cornet, Ronald and Chatzistergos, Panagiotis and Dejaco, Alexander and Dusseljee-Peute, Linda and Mohasseb, Alaa and Natsiavas, Pantelis and Nakkas, Haythem and Scott, Philip, Eds. IOS Press, May2025.
DOI:10.3233/SHTI250271
ISBN:978-1-64368-596-0
File: SHTI250271
Benjamin Kinast, Joshua Wiedekopf, Hannes Ulrich, and Björn Schreiweis,
Extracting LOINC Codes from a Laboratory Information System’s Index: Addressing Semantic Interoperability with Web Scraping, in Studies in Health Technology and Informatics , Baumgartner, Martin and Hayn, Dieter and Pfeifer, Bernhard and Schreier, Günter, Eds. IOS Press, Apr.2025.
DOI:10.3233/SHTI250194
ISBN:978-1-64368-592-2
File: SHTI250194
Tessa Ohlsen, Viola Hofer, and Josef Ingenerf,
A Validation Tool (VaPCE) for Postcoordinated SNOMED CT Expressions: Development and Usability Study, JMIR Medical Informatics , vol. 13, pp. e67984--e67984, Feb. 2025.
DOI:10.2196/67984
File: e67984
Cassandra Krause, Lena Harkämper, Gabriela Ciortuz, and Sebastian Fudickar,
Comparison of Deep Learning and Machine Learning Approaches for the Recognition of Dynamic Activities of Daily Living, in Sensor-Based Activity Recognition and Artificial Intelligence , Konak, Orhan and Arnrich, Bert and Bieber, Gerald and Kuijper, Arjan and Fudickar, Sebastian, Eds. Cham: Springer Nature Switzerland, 2025, pp. 18--39.
DOI:10.1007/978-3-031-80856-2_2
ISBN:9783031808562
File: 978-3-031-80856-2_2
Gabriela Ciortuz, Hawzhin Hozhabr Pour, Muhammad Tausif Irshad, Muhammad Adeel Nisar, Xinyu Huang, and Sebastian Fudickar,
Machine learning models for wearable-based human activity recognition: A comparative study, Neurocomputing , vol. 650, pp. 130911, 2025.
DOI:https://doi.org/10.1016/j.neucom.2025.130911
File: S0925231225015838
Hawzhin Hozhabr Pour, Gabriela Ciortuz, André Lüers, and Sebastian Fudickar,
Performance Analysis of a Data Stream Processing System for Online Activity Classification via Wearable Sensor Data, in Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies - HEALTHINF , SciTePress, 2025. pp. 571--578.
DOI:10.5220/0013166100003911
ISBN:978-989-758-731-3
[en] Iryna Manuilova, Jan Bossenz, Annemarie Bianka Weise, Dominik Boehm, Marvin Döbel, Silke D. Werle, Arsenij Ustjanzew, Niklas Reimer, Cosima Strantz, Philipp Unberath, Patrick Metzger, Thomas Pauli, Susann Schulze, Sonja Hiemer, Irmak Oguztürk, Leila Kamkar, Hans A. Kestler, Hauke Busch, Benedikt Brors, and Jan Christoph,
Uncovering the Understanding of the Concept of Patient Similarity in Cancer Research and Treatment: A Scoping Review (Preprint), Journal of Medical Internet Research , Jan. 2025.
DOI:10.2196/71906
File: accepted
[eng] Rica Schulze, Roland Stenger, Sebastian Loens, Tobias Baeumer, and Sebastian Fudickar,
Usability and adherence evaluation of a smartphone app for home-based symptom monitoring of cervical dystonia, Digital Health , vol. 11, pp. 20552076251344515, 2025.
DOI:10.1177/20552076251344515
File: 20552076251344515
William Philipp, Ali Gölge, Andreas Hein, and Sebastian Fudickar,
Usability Evaluation of a Chatbot for Fitness and Health Recommendations Among Seniors in Assisted Healthcare, in Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies - HEALTHINF , SciTePress, 2025. pp. 483--490.
DOI:10.5220/0013139800003911
ISBN:978-989-758-731-3

2024

Jesse Kruse, Joshua Wiedekopf, Ann-Kristin Kock-Schoppenhauer, Andrea Essenwanger, Josef Ingenerf, and Hannes Ulrich,
A Generic Transformation Approach for Complex Laboratory Data Using the Fast Healthcare Interoperability Resources Mapping Language: Method Development and Implementation, JMIR Medical Informatics , vol. 12, pp. e57569—e57569, Oct. 2024.
DOI:10.2196/57569
File: e57569
Lorenz Rosenau, Julian Gruendner, Alexander Kiel, Thomas Köhler, Bastian Schaffer, and Raphael W Majeed,
Bridging Data Models in Health Care With a Novel Intermediate Query Format for Feasibility Queries: Mixed Methods Study, JMIR Medical Informatics , vol. 12, pp. e58541--e58541, Oct. 2024.
DOI:10.2196/58541
File: e58541
Tessa Ohlsen, Viola Hofer, and Josef Ingenerf,
VaPCE: Validation tool for postcoordinated SNOMED CT expressions, JMIR Medical Informatics , Oct. 2024.
DOI:10.2196/67984
File: accepted
Hannah Schmidt, Katja Baust, Gabriele Calaminus, Lisa Hohls, Katharina Tetzner, Nicole Griech, Henrike Haugke, Hannah Baltus, Susanne Elsner, Alexander Katalinic, Hera Becker, Chirine Cytera, Judith Gebauer, Ann-Kristin Kock-Schoppenhauer, Anke Neumann, Christian Denzer, Michael M. Schündeln, Jörg Faber, Conny Sattler, Michael C. Frühwald, Anja Borgmann-Staudt, Anke Barnbrock, Markus Metzler, Gabriele Escherich, Inke R. König, Ingo Menrath, and Thorsten Langer,
Effectiveness of structured, multidisciplinary long-term care for pediatric cancer survivors: protocol of the multicenter, randomized-controlled AELKI study, Trials , vol. 25, no. 1, pp. 597, Sep. 2024.
DOI:10.1186/s13063-024-08377-2
File: s13063-024-08377-2
Tessa Ohlsen, Josef Ingenerf, Andrea Essenwanger, and Cora Drenkhahn,
PCEtoFHIR: Decomposition of Postcoordinated SNOMED CT Expressions for Storage as HL7 FHIR Resources, JMIR Medical Informatics , vol. 12, pp. e57853, Sep. 2024.
DOI:10.2196/57853
File: e57853
Cecilia Engels, Zdenka Dudová, Martin Breu, David Croft, Christoph Dolch, Petra Duhm-Harbeck, Lars Ebert, Cäcilia Engels, Christian Knell, Ann-Kristin Kock-Schoppenhauer, John Linde, Christian Maier, Michael Neumann, Matthias Öfelein, Matthias Rambow, Susanne Sahr, Florian Stampe, Deniz Tas, Hannes Ulrich, and Hans-Ulrich Prokosch,
The sample locator: A federated search tool for biosamples and associated data in Europe using HL7 FHIR, Computers in Biology and Medicine , vol. 180, pp. 108941, Sep. 2024.
DOI:10.1016/j.compbiomed.2024.108941
File: S0010482524010266
Davide Saraceno, Catherine Chronaki, Giorgio Cangioli, Anna-Liesa Filbert, Monica Muraca, Alessandra Berti, Rita Rielli, Nikos Thomopulos, Lisa Knoerr, Diana Walz, Anke Neumann, Andrea Beccaria, Anna Aulicino, Brigitte Nicolas, Giacomo Cavalca, Anne Uyttebroeck, Maria Van Helvoirt, Tom Brié, Erik Vanden Meersch, Ruth Ladenstein, Edit Bardi, Günter Schreier, Stefan Beyer, Markus Müllner-Rieder, María Teresa Tormo Alcañiz, Lucas Cervero Beltran, Jelena Rascon, Monika Kapitančukė, Justas Trinkunas, Eglė Stukaitė-Ruibienė, Paulius Ragauskas, Audronė Ciesiūnienė, Riccardo Haupt, and Desiree Grabow,
Assessment of HL7 FHIR Interoperability Between EHR Systems and the Survivorship Passport v2.0 Platform to Generate Treatment Summaries for Childhood Cancer Survivors in Six Clinics: Preliminary Testing Results, in Studies in Health Technology and Informatics , Mantas, John and Hasman, Arie and Demiris, George and Saranto, Kaija and Marschollek, Michael and Arvanitis, Theodoros N. and Ognjanović, Ivana and Benis, Arriel and Gallos, Parisis and Zoulias, Emmanouil and Andrikopoulou, Elisavet, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240646
ISBN:9781643685335
File: SHTI240646
Michael Anywar, Mário Macedo, Santiago Pazmino, Tobias Bronsch, Benjamin Kinast, Ann-Kristin Kock-Schoppenhauer, and Björn Schreiweis,
Challenges and Lessons Learned in Mapping HL7 v2 Data to openEHR: Insights from UKSH Medical Data Integration Center, in Studies in Health Technology and Informatics , Mantas, John and Hasman, Arie and Demiris, George and Saranto, Kaija and Marschollek, Michael and Arvanitis, Theodoros N. and Ognjanović, Ivana and Benis, Arriel and Gallos, Parisis and Zoulias, Emmanouil and Andrikopoulou, Elisavet, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240658
ISBN:978-1-64368-533-5
File: SHTI240658
PanCareSurPass Consortium, Roberta Gazzarata, Michael Strübin, Catherine Chronaki, Giorgio Cangioli, Davide Saraceno, Günter Schreier, Stefan Beyer, Florian Trauner, Gerald Gredinger, Ruth Ladenstein, Ismay Ae De Beijer, Giacomo Cavalca, Justas Trinkunas, Lucas Cervero Beltran, Mark Vanautgaerden, Ann-Kristin Kock-Schoppenhauer, Anke Neumann, Monica Muraca, Anna-Liesa Filbert, Riccardo Haupt, and Desiree Grabow,
Childhood Cancer Survivorship Passport Challenges in the European Health Data Space, in Studies in Health Technology and Informatics , Mantas, John and Hasman, Arie and Demiris, George and Saranto, Kaija and Marschollek, Michael and Arvanitis, Theodoros N. and Ognjanović, Ivana and Benis, Arriel and Gallos, Parisis and Zoulias, Emmanouil and Andrikopoulou, Elisavet, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240651
ISBN:978-1-64368-533-5
File: SHTI240651
Torge Ablaß, Friedrich Simon, Christina Schwitlick, Denise Olbrich, Kristina Brandt, Ina Hohensee, Nikolas Von Bubnoff, Claudia Baldus, Josef Ingenerf, Björn Schreiweis, and Ann-Kristin Kock-Schoppenhauer,
Development, Involvement and Use of an Overarching In-House Registry for Clinical Trials, in Studies in Health Technology and Informatics , Röhrig, Rainer and Grabe, Niels and Hübner, Ursula Hertha and Jung, Klaus and Sax, Ulrich and Schmidt, Carsten Oliver and Sedlmayr, Martin and Zapf, Antonia, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240846
ISBN:978-1-64368-536-6
File: SHTI240846
Jan Schladetzky, Niklas Reimer, Herwig Nicolaus, Hauke Busch, Björn Schreiweis, and Ann-Kristin Kock-Schoppenhauer,
Integration of Oncological Data into openEHR: A Path Towards Improved Cancer Care and Research, in Studies in Health Technology and Informatics , Mantas, John and Hasman, Arie and Demiris, George and Saranto, Kaija and Marschollek, Michael and Arvanitis, Theodoros N. and Ognjanović, Ivana and Benis, Arriel and Gallos, Parisis and Zoulias, Emmanouil and Andrikopoulou, Elisavet, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240655
ISBN:978-1-64368-533-5
File: SHTI240655
Friedrich Simon, Jan Schladetzky, Stefanie Macke, Torge Ablaß, Josef Ingenerf, and Ann-Kristin Kock-Schoppenhauer,
Metadata Driven Integration of Clinical Data for Secondary Use in FHIR – A Pilot Study at the UKSH, in Studies in Health Technology and Informatics , Röhrig, Rainer and Grabe, Niels and Hübner, Ursula Hertha and Jung, Klaus and Sax, Ulrich and Schmidt, Carsten Oliver and Sedlmayr, Martin and Zapf, Antonia, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240850
ISBN:978-1-64368-536-6
File: SHTI240850
Tessa Ohlsen, Joshua Wiedekopf, and Josef Ingenerf,
Reformatted Crosswalk-Tables Between Annual ICD-10-Versions for Cross Version Data Analysis, in Studies in Health Technology and Informatics , Mantas, John and Hasman, Arie and Demiris, George and Saranto, Kaija and Marschollek, Michael and Arvanitis, Theodoros N. and Ognjanović, Ivana and Benis, Arriel and Gallos, Parisis and Zoulias, Emmanouil and Andrikopoulou, Elisavet, Eds. IOS Press, Aug.2024.
DOI:10.3233/SHTI240652
ISBN:978-1-64368-533-5
File: SHTI240652
Ronja Schappert, Julius Verrel, Nele Sophie Brügge, Frédéric Li, Theresa Paulus, Leonie Becker, Tobias Bäumer, Christian Beste, Veit Roessner, Sebastian Fudickar, and Alexander Münchau,
Automated Video‐Based Approach for the Diagnosis of Tourette Syndrome, Movement Disorders Clinical Practice , Jul. 2024.
DOI:10.1002/mdc3.14158
File: mdc3.14158
Sabrina H. Schröder, Christian Seitzer, Navid Tabriz, Heinrich Töpfer, Jan-Marek Meyer, Sebastian Fudickar, Dirk Weyhe, and Verena Uslar,
Requirements for the Acceptance of an App for Voice Therapy—A Usability Report Based on the “Oldenburger Logopädie App” (OLA), Journal of Voice , Jul. 2024.
DOI:10.1016/j.jvoice.2024.06.015
File: j.jvoice.2024.06.015
Lorenz Rosenau, Paul Behrend, Joshua Wiedekopf, Julian Gruendner, and Josef Ingenerf,
Uncovering Harmonization Potential in Health Care Data Through Iterative Refinement of Fast Healthcare Interoperability Resources Profiles Based on Retrospective Discrepancy Analysis: Case Study, JMIR Medical Informatics , vol. 12, pp. e57005, Jul. 2024.
DOI:10.2196/57005
File: e57005
Danny Ammon, Maximilian Kurscheidt, Karoline Buckow, Toralf Kirsten, Matthias Löbe, Frank Meineke, Fabian Prasser, Julian Sass, Ulrich Sax, Sebastian Stäubert, Sylvia Thun, Reto Wettstein, Joshua P. Wiedekopf, Judith A. H. Wodke, Martin Boeker, and Thomas Ganslandt,
Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative, Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz , vol. 67, no. 6, pp. 656—667, Jun. 2024.
DOI:10.1007/s00103-024-03888-4
Hayder R. Al-Omairi, Arkan AL-Zubaidi, Sebastian Fudickar, Andreas Hein, and Jochem W. Rieger,
Hammerstein–Wiener Motion Artifact Correction for Functional Near-Infrared Spectroscopy: A Novel Inertial Measurement Unit-Based Technique, Sensors , vol. 24, no. 10, pp. 3173, May 2024.
DOI:10.3390/s24103173
File: s24103173
Julia Von Grundherr, Simon Elmers, Barbara Koch, Lesley-Ann Hail, Julia Mann, Gabriele Escherich, Corinna Bergelt, Luisa Samland, Wiebke Jensen, Eik Vettorazzi, Maria Stark, Luzia Valentini, Freerk T. Baumann, Susanne Singer, Rüdiger Reer, Ronja Beller, Gabriele Calaminus, Jörg Faber, Carl Friedrich Classen, Judith Gebauer, Inken Hilgendorf, Michael Koehler, Alexander Puzik, Nicole Salzmann, Annette Sander, Lisa Schiffmann, Magdalena Sokalska-Duhme, Sonja Schuster, Ann-Kristin Kock-Schoppenhauer, Carsten Bokemeyer, Marianne Sinn, Alexander Stein, Sarah Dwinger, and Jannike Salchow,
A Multimodal Lifestyle Psychosocial Survivorship Program in Young Cancer Survivors: The CARE for CAYA Program—A Randomized Clinical Trial Embedded in a Longitudinal Cohort Study, JAMA Network Open , vol. 7, no. 3, pp. e242375, Mar. 2024.
DOI:10.1001/jamanetworkopen.2024.2375
File: 2816738
Jesse Kruse, Joshua Wiedekopf, Ann-Kristin Kock-Schoppenhauer, Andrea Essenwanger, Josef Ingenerf, and Hannes Ulrich,
FML2Mirth: Generic Transformation of complex laboratory data based on FML mapping rules and automatically generated Mirth channels (Preprint), JMIR Medical Informatics , Feb. 2024.
DOI:10.2196/57569
File: accepted
Roland Stenger, Rica Schulze, Sebastian Löns, Tobias Bäumer, and Sebastian Fudickar,
Android App for Symptomatic Monitoring of Cervical Dystonia: Design and Usability Study, in Proceedings of the 17th {International} {Joint} {Conference} on {Biomedical} {Engineering} {Systems} and {Technologies} , SCITEPRESS - Science and Technology Publications, 2024.
DOI:10.5220/0012465300003657
File: 0012465300003657
[de] Björn Schreiweis, Hannes Ulrich, Heike Lehmann, Ann-Kristin Kock-Schoppenhauer, Benjamin Kinast, and Björn Bergh,
Die Wissensmanagementplattform für Versorgung und Forschung am Universitätsklinikum Schleswig-Holstein – Ein Praxisbeispiel, in Health Data Management , Henke, Viola and Hülsken, Gregor and Schneider, Henning and Varghese, Julian, Eds. Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 689--701.
DOI:10.1007/978-3-658-43236-2_58
ISBN:978-3-658-43235-5 978-3-658-43236-2
File: 978-3-658-43236-2_58
Gabriela Ciortuz, Hawzhin Hozhabr Pour, and Sebastian Fudickar,
Evaluating Movement and Device-Specific DeepConvLSTM Performance in Wearable-Based Human Activity Recognition, in Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies , SciTePress, 2024. pp. 746--753.
DOI:10.5220/0012471300003657
ISBN:978-989-758-688-0
File: 0012471300003657
Roland Stenger, Steffen Busse, Jonas Sander, Thomas Eisenbarth, and Sebastian Fudickar,
Evaluating the Impact of Face Anonymization Methods on Computer Vision Tasks: A Trade-off Between Privacy and Utility, IEEE Access , pp. 1--1, 2024.
DOI:10.1109/access.2024.3519441
File: ACCESS.2024.3519441
Herwig Nicolaus, Michael Anywar, Santiago Pazmino Pinto, Hannes Ulrich, Jan Schladetzky, Ann-Kristin Kock-Schoppenhauer, and Josef Ingenerf,
Integration of the Oncologic Base Data Set into the UKSH Medical Data Integration Center, in Student Conference 2024, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology , Lübeck: Infinite Science Publishing, 2024.
Gabriela Ciortuz, Joshua Wiedekopf, and Sebastian Fudickar,
Integration von Wearables und Nutzung von digitalen Biomarkern zur Diagnostik und Therapie im Gesundheitswesen, in Health {Data} {Management} , Henke, Viola and Hülsken, Gregor and Schneider, Henning and Varghese, Julian, Eds. Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 323--336.
DOI:10.1007/978-3-658-43236-2_31
ISBN:9783658432362
File: 978-3-658-43236-2_31
Sebastian Fudickar, Carsten Bantel, Jannik Spieker, Heinrich Töpfer, Patrick Stegeman, Henrica Schiphorst-Preuper, Michiel Reneman, André Wolff, and Remko Soer,
Natural Language Processing of Referral Letters for Machine Learning–Based Triaging of Patients With Low Back Pain to the Most Appropriate Intervention: Retrospective Study, Journal of Medical Internet Research , vol. 26, Jan. 2024.
DOI:10.2196/46857
File: 46857
Lorenz Rosenau, and Josef Ingenerf,
Structured Queries to AQL: Querying OpenEHR Data Leveraging a FHIR-Based Infrastructure for Federated Feasibility Queries, in MEDINFO 2023 — The Future Is Accessible , IOS Press, 2024, pp. 33--37.
DOI:10.3233/SHTI230922
File: SHTI230922
Maximilian Kurscheidt, Joshua Wiedekopf, Julian Gruendner, Lucas Triefenbach, Simon Tobias Schweizer, Julian Sass, Reto Wettstein, Hauke Hund, Bettina Uliczka, Christian Fegeler, and Lorenz Rosenau,
Trust and Uniformity through FHIR Validation: A Proposal for Establishing Guarantees in Cross-Institutional Healthcare Data Exchange, Gesundheit – gemeinsam. Kooperationstagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Deutschen Gesellschaft für Sozialmedizin und Prävention (DGSMP), Deutschen Gesellschaft für Epidemiologie (DGEpi), Deuts , 2024. German Medical Science GMS Publishing House.
DOI:10.3205/24GMDS011
File: 24gmds011.shtml

2023

Ismay A. E. De Beijer, Roderick Skinner, Andrea Beccaria, Patricia McColgan, Ramona Tallone, Leontien C. M. Kremer, Helena J. H. Van Der Pal, Renée L. Mulder, {on PanCareSurPass consortium}, Dorothea Niehoff, Diana Walz, Friederike Erdmann, Claudia Spix, Simone Lightwood, Francesca Bagnasco, Giacomo Cavalca, Sara Oberti, Brigitte Nicolas, Ruth Ladenstein, Vanessa Düster, Maria Van Helvoirt, Jurgen Lemiere, Marleen Renard, An Michiels, Ann-Kristin Kock-Schoppenhauer, Lea Hildebrand, Anke Neumann Anne-Katrin Jahnke, Justas Trinkunas, Audronė Ciesiūnienė, Paulius Ragauskas, Julia Balaguer Guill, Maria Teresa Tormo Alcañiz, Antonio Orduña Galan, Marisa Correcher Palau, Lucas Cervero Beltrán, Vicente Pons Tamarit, Davide Saraceno, Alessandra Berti, Carlo Contino, Nikos Thomopulos, Giulia Stabile, Maria Franca Tomassi, Igor Zamberlan, Barbara Nichel, Günter Schreier, Dieter Hayn, Karl Kreiner, Stefan Beyer, Catherine Chronaki, Giorgio Cangioli, Eliana Charalambous, Alexander Degelsegger-Márquez, Gerald Gredinger, Kathrin Trunner, Florian Trauner, Anja Laschkolnig, Leontien Kremer, Saskia Pluijm, Selina Van Den Oever, Ismay De Beijer, Jessica Trollip, Emma Hardijzer, Jaap Den Hartogh, Jeroen Te Dorsthorst, William Sciberras, and Carina Schneider,
European recommendations for short-term surveillance of health problems in childhood, adolescent and young adult cancer survivors from the end of treatment to 5 years after diagnosis: a PanCare guideline, Journal of Cancer Survivorship , Dec. 2023.
DOI:10.1007/s11764-023-01493-z
File: s11764-023-01493-z
Christopher Renner, Niklas Reimer, Jan Christoph, Hauke Busch, Patrick Metzger, Melanie Boerries, Arsenij Ustjanzew, Dominik Boehm, and Philipp Unberath,
Extending cBioPortal for Therapy Recommendation Documentation in Molecular Tumor Boards: Development and Usability Study, JMIR Medical Informatics , vol. 11, pp. e50017, Dec. 2023.
DOI:10.2196/50017
File: e50017
Jonas Bienzeisler, Ariadna Perez-Garriga, Lea C. Brandl, Ann-Kristin Kock-Schoppenhauer, Yasmin Hollenbenders, Maximilian Kurscheidt, and Christina Schüttler,
Report from the 68th GMDS Annual Meeting: Science. Close to People, Methods of Information in Medicine , vol. 62, no. 05/06, pp. 202--205, Dec. 2023.
DOI:10.1055/s-0043-1777733
File: DOI
Jan Schladetzky, Ann-Kristin Kock-Schoppenhauer, Cora Drenkhahn, Josef Ingenerf, and Joshua Wiedekopf,
Mettertron – Bridging Metadata Repositories and Terminology Servers, Studies in Health Technology and Informatics , Sep. 2023.
DOI:10.3233/SHTI230721
File: SHTI230721
Hanno M. Witte, Jörg Riedl, Axel Künstner, Anke Fähnrich, Julius Ketzer, Stephanie M. J. Fliedner, Niklas Reimer, Veronica Bernard, Nikolas Von Bubnoff, Hartmut Merz, Hauke Busch, Alfred Feller, and Niklas Gebauer,
Molecularly Stratified Treatment Options in Primary Refractory DLBCL/HGBL with MYC and BCL2 or BCL6 Rearrangements (HGBL, NOS with MYC/BCL6), Targeted Oncology , vol. 18, no. 5, pp. 749--765, Sep. 2023.
DOI:10.1007/s11523-023-00983-5
File: s11523-023-00983-5
Christian Lins, Erik Berwald, Andreas Klausen, Andreas Hein, and Sebastian Fudickar,
EA-based smartwatch application for training and assistance in cardiopulmonary resuscitation, in Proceedings of the Companion Conference on Genetic and Evolutionary Computation , ACM, Jul.2023.
DOI:10.1145/3583133.3590752
File: 3583133.3590752
Madelaine Sleimann, Magdalena Balcerek, Chirine Cytera, Franziska Richter, Anja Borgmann-Staudt, Bernhard Wörmann, Lea Louisa Kronziel, Gabriele Calaminus, Ann-Kristin Kock-Schoppenhauer, Desiree Grabow, Katja Baust, Anke Neumann, Thorsten Langer, and Judith Gebauer,
Implementation of a clinical long-term follow-up database for adult childhood cancer survivors in Germany: a feasibility study at two specialised late effects clinics, Journal of Cancer Research and Clinical Oncology , Jul. 2023.
DOI:10.1007/s00432-023-05145-8
File: s00432-023-05145-8
Bibtex: BibTeX
@article{sleimann_implementation_2023,
	title = {Implementation of a clinical long-term follow-up database for adult childhood cancer survivors in {Germany}: a feasibility study at two specialised late effects clinics},
	issn = {1432-1335},
	shorttitle = {Implementation of a clinical long-term follow-up database for adult childhood cancer survivors in {Germany}},
	url = {https://doi.org/10.1007/s00432-023-05145-8},
	doi = {10.1007/s00432-023-05145-8},
	abstract = {Childhood cancer survivors (CCS) are at risk for increased morbidity and reduced quality of life associated with treatment-related late effects. In Germany, however, only a few of the more than 40,000 CCS registered in the German Childhood Cancer Registry (GCCR) currently benefit from adequate clinical long-term follow-up (LTFU) structures. To establish a comprehensive knowledge base on CCS’ long-term health in Germany, a database was developed in cooperation with the GCCR. Following a first evaluation phase at two German university centres, this database will be implemented more widely within Germany allowing longitudinal documentation of clinical LTFU data.},
	language = {en},
	urldate = {2023-07-18},
	journal = {Journal of Cancer Research and Clinical Oncology},
	author = {Sleimann, Madelaine and Balcerek, Magdalena and Cytera, Chirine and Richter, Franziska and Borgmann-Staudt, Anja and Wörmann, Bernhard and Kronziel, Lea Louisa and Calaminus, Gabriele and Kock-Schoppenhauer, Ann-Kristin and Grabow, Desiree and Baust, Katja and Neumann, Anke and Langer, Thorsten and Gebauer, Judith},
	month = jul,
	year = {2023},
	keywords = {Childhood cancer survivors, Epidemiology, Health, Late effects, Long-term follow-up, Quality of life},
}
Patrick Metzger, Maria Elena Hess, Andreas Blaumeiser, Thomas Pauli, Vincent Schipperges, Ralf Mertes, Jan Christoph, Philipp Unberath, Niklas Reimer, Raphael Scheible, Anna L. Illert, Hauke Busch, Geoffroy Andrieux, and Melanie Boerries,
MIRACUM-Pipe: An Adaptable Pipeline for Next-Generation Sequencing Analysis, Reporting, and Visualization for Clinical Decision Making, Cancers , vol. 15, no. 13, pp. 3456, Jul. 2023.
DOI:10.3390/cancers15133456
File: 3456
Nele Sophie Brügge, Gesine Marie Sallandt, Ronja Schappert, Frédéric Li, Alina Siekmann, Marcin Grzegorzek, Tobias Bäumer, Christian Frings, Christian Beste, Roland Stenger, Veit Roessner, Sebastian Fudickar, Heinz Handels, and Alexander Münchau,
Automated Motor Tic Detection: A Machine Learning Approach, Movement Disorders , May 2023.
DOI:10.1002/mds.29439
File: mds.29439
Alexander Pauls, Jürgen M. Bauer, Rebecca Diekmann, Sebastian Fudickar, Andreas Hein, Sandra Hellmers, Sandra Lau, Jochen Meyer, Kai Holdt, and Frauke Koppelin,
Motivationsgründe und Vorstellungen über eine zukünftige Beteiligung älterer Menschen im Forschungs- und Entwicklungsprozess von Gesundheitstechnologien – eine Mixed Methods-Studie, Das Gesundheitswesen , vol. 85, no. 10, pp. 895--903, May 2023.
DOI:10.1055/a-2042-9629
File: a-2042-9629
Joshua Wiedekopf, Cora Drenkhahn, and Josef Ingenerf,
Performance Benchmarking of FHIR Terminology Operations in ETL Jobs, in Studies in Health Technology and Informatics , Hägglund, Maria and Blusi, Madeleine and Bonacina, Stefano and Nilsson, Lina and Cort Madsen, Inge and Pelayo, Sylvia and Moen, Anne and Benis, Arriel and Lindsköld, Lars and Gallos, Parisis, Eds. IOS Press, May2023.
DOI:10.3233/SHTI230244
ISBN:978-1-64368-388-1 978-1-64368-389-8
File: SHTI230244
Hans-Ulrich Prokosch, Julian Gruendner, and Lorenz Rosenau,
Towards a National Portal for Medical Research Data (FDPG): Vision, Status, and Lessons Learned, Studies in Health Technology and Informatics , vol. 302, pp. 307--311, May 2023.
DOI:10.3233/SHTI230124
Cora Drenkhahn, Tessa Ohlsen, Joshua Wiedekopf, and Josef Ingenerf,
WASP—A Web Application to Support Syntactically and Semantically Correct SNOMED CT Postcoordination, Applied Sciences , vol. 13, no. 10, pp. 6114, May 2023.
DOI:10.3390/app13106114
File: 6114
Bibtex: BibTeX
@article{drenkhahn_waspweb_2023,
	title = {{WASP}—{A} {Web} {Application} to {Support} {Syntactically} and {Semantically} {Correct} {SNOMED} {CT} {Postcoordination}},
	volume = {13},
	issn = {2076-3417},
	url = {https://www.mdpi.com/2076-3417/13/10/6114},
	doi = {10.3390/app13106114},
	abstract = {Expressive clinical terminologies are of utmost importance for achieving a semantically interoperable data exchange and reuse in healthcare. SNOMED CT, widely respected as the most comprehensive terminology in medicine, provides formal concept definitions based on description logic which not only allows for advanced querying of SNOMED-CT-coded data but also for flexibly augmenting its 350,000 concepts by allowing a controlled combination of these. This ability for postcoordination largely increases the expressivity of the terminology but correlates with an intrinsic complexity. Complicated by the current lack of tooling support, postcoordination is widely either ignored or applied in an error-prone way. To help facilitate the adoption of postcoordination, we implemented a web application that guides users through the creation of postcoordinated expressions (PCEs) while ensuring adherence to syntactic and semantic constraints. Our approach was largely facilitated by making use of the extensive SNOMED CT specifications as well as advanced HL7 FHIR Terminology Services. Qualitative evaluations confirmed the usability of the developed application and the correctness of the PCEs created with it.},
	language = {en},
	number = {10},
	urldate = {2023-05-22},
	journal = {Applied Sciences},
	author = {Drenkhahn, Cora and Ohlsen, Tessa and Wiedekopf, Joshua and Ingenerf, Josef},
	month = may,
	year = {2023},
	pages = {6114},
}
Hayder R. Al-Omairi, Sebastian Fudickar, Andreas Hein, and Jochem W. Rieger,
Improved Motion Artifact Correction in fNIRS Data by Combining Wavelet and Correlation-Based Signal Improvement, Sensors , vol. 23, no. 8, pp. 3979, Apr. 2023.
DOI:10.3390/s23083979
File: s23083979
Selina R. Van Den Oever, Ismay A. E. De Beijer, Leontien C. M. Kremer, Marie Alfes, Julia Balaguer, Adela Cañete Nieto, Tiago Costa, Alexander Degelsegger, Maria Teresa Tormo, Helena J. H. Van Der Pal, Saskia M. F. Pluijm, {on PanCareSurPass consortium}, Dorothea Niehoff, Diana Walz, Friederike Erdmann, Claudia Spix, Simone Lightwood, Francesca Bagnasco, Giacomo Cavalca, Sara Oberti, Brigitte Nicolas, Jurgen Lemiere, Marleen Renard, An Michiels, Ann-Kristin Kock-Schoppenhauer, Lea Hildebrand, Anke Neumann, Anne-Katrin Jahnke, Audronė Ciesiūnienė, Paulius Ragauskas, Adela Cañete Nieto, Julia Balaguer Guill, María Teresa Tormo Alcañiz, Antonio Orduña Galan, Marisa Correcher Palau, Lucas Cervero Beltrán, Vicente Pons Tamarit, Davide Saraceno, Alessandra Berti, Carlo Contino, Nikos Thomopulos, Giulia Stabile, Maria Franca Tomassi, Igor Zamberlan, Barbara Nichel, Dieter Hayn, Karl Kreiner, Stefan Beyer, Alexander Degelsegger-Márquez, Florian Trauner, Leontien Kremer, Saskia Pluijm, Selina Van Den Oever, Ismay De Beijer, Emma Hardijzer, Jaap Den Hartogh, Jeroen Te Dorsthorst, Samira Essiaf, William Sciberras, Anita Kienesberger, and Carina Schneider,
Barriers and facilitators to implementation of the interoperable Survivorship Passport (SurPass) v2.0 in 6 European countries: a PanCareSurPass online survey study, Journal of Cancer Survivorship , Feb. 2023.
DOI:10.1007/s11764-023-01335-y
File: s11764-023-01335-y
Christian Lins, Franziska Quang, Rica Schulze, Stefanie Lins, Andreas Hein, and Sebastian Fudickar,
An Android App for Posture Analysis Using OWAS, in Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies - HEALTHINF, , SciTePress, 2023. pp. 307--313.
DOI:10.5220/0011668300003414
ISBN:978-989-758-631-6
Birte S. Löffler, Heiko I. Stecher, Arnd Meiser, Sebastian Fudickar, Andreas Hein, and Christoph S. Herrmann,
Attempting to counteract vigilance decrement in older adults with brain stimulation, Frontiers in Neuroergonomics , vol. 4, 2023.
DOI:10.3389/fnrgo.2023.1201702
File: fnrgo.2023.1201702
Gabriela Ciortuz, Marcin Grzegorzek, and Sebastian Fudickar,
Effects of Time-Series Data Pre-Processing on the Transformer-Based Classification of Activities from Smart Glasses, in Proceedings of the 8th International Workshop on Sensor-Based Activity Recognition and Artificial Intelligence , New York, NY, USA: Association for Computing Machinery, 2023.
DOI:10.1145/3615834.3615858
ISBN:9798400708169
File: 3615834.3615858
Roland Stenger, Sebastian Löns, Feline Hamami, Nele Brügge, Tobias Bäumer, and Sebastian Fudickar,
Extended Head Pose Estimation on Synthesized Avatars for Determining the Severity of Cervical Dystonia, in Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies , SCITEPRESS - Science and Technology Publications, 2023.
DOI:10.5220/0011677600003414
File: 0011677600003414
Hanno M. Witte, Anke Fähnrich, Axel Künstner, Jörg Riedl, Stephanie M. J. Fliedner, Niklas Reimer, Nadine Hertel, Nikolas Bubnoff, Veronica Bernard, Hartmut Merz, Hauke Busch, Alfred Feller, and Niklas Gebauer,
Primary refractory plasmablastic lymphoma: A precision oncology approach, Frontiers in Oncology , vol. 13, 2023.
DOI:10.3389/fonc.2023.1129405
File: fonc.2023.1129405
Josef Ingenerf, and Cora Drenkhahn,
Referenzterminologie SNOMED CT ⎼ Interlingua zur Gewährleistung semantischer Interoperabilität in der Medizin., .... 1 Springer Vieweg Wiesbaden, 2023.
ISBN:978-3-658-35562-3
Josef Ingenerf, and Cora Drenkhahn,
SNOMED CT: Nutzung im Kontext von Informationsmodellen, in Referenzterminologie SNOMED CT , Wiesbaden: Springer Fachmedien Wiesbaden, 2023, pp. 213--307.
DOI:10.1007/978-3-658-35562-3_5
ISBN:978-3-658-35561-6 978-3-658-35562-3
File: 978-3-658-35562-3_5

2022

Sebastian Fudickar,
Approaching digital interventions for musculoskeletal rehabilitation, Journal of Back and Musculoskeletal Rehabilitation , vol. 35, no. 6, pp. 1169--1170, Nov. 2022.
DOI:10.3233/bmr-225004
File: bmr-225004
Jochen Meyer, Tiara Ratz, Alexander Pauls, Sandra Hellmers, Susanne Boll, Sebastian Fudickar, Andreas Hein, Jürgen M. Bauer, Frauke Koppelin, Sonia Lippke, Manuela Peters, Claudia R. Pischke, Claudia Voelcker-Rehage, Hajo Zeeb, and Sarah Forberger,
Designing and applying technology for prevention—Lessons learned in AEQUIPA and its implications for future research and practice, Frontiers in Public Health , vol. 10, Oct. 2022.
DOI:10.3389/fpubh.2022.832922
File: fpubh.2022.832922
Gabriela Augustinov, Muhammad Adeel Nisar, Frédéric Li, Amir Tabatabaei, Marcin Grzegorzek, Keywan Sohrabi, and Sebastian Fudickar,
Transformer-Based Recognition of Activities of Daily Living from Wearable Sensor Data, in Proceedings of the 7th {International} {Workshop} on {Sensor}-based {Activity} {Recognition} and {Artificial} {Intelligence} , New York, NY, USA: ACM, Sep.2022.
DOI:10.1145/3558884.3558895
ISBN:9781450396240
File: 3558884.3558895
[eng] Joshua Wiedekopf, Hannes Ulrich, Cora Drenkhahn, Ann-Kristin Kock-Schoppenhauer, and Josef Ingenerf,
TermiCron - Bridging the Gap Between FHIR Terminology Servers and Metadata Repositories, Studies in Health Technology and Informatics , vol. 290, pp. 71--75, Jun. 2022.
DOI:10.3233/SHTI220034
File: SHTI220034
Bibtex: BibTeX
@article{wiedekopf_termicron_2022,
	title = {{TermiCron} - {Bridging} the {Gap} {Between} {FHIR} {Terminology} {Servers} and {Metadata} {Repositories}},
	volume = {290},
	issn = {1879-8365},
	url = {https://doi.org/10.3233/SHTI220034},
	doi = {10.3233/SHTI220034},
	abstract = {The large variability of data models, specifications, and interpretations of data elements is particular to the healthcare domain. Achieving semantic interoperability is the first step to enable reuse of healthcare data. To ensure interoperability, metadata repositories (MDR) are increasingly used to manage data elements on a structural level, while terminology servers (TS) manage the ontologies, terminologies, coding systems and value sets on a semantic level. In practice, however, this strict separation is not always followed; instead, semantical information is stored and maintained directly in the MDR, as a link between both systems is missing. This may be reasonable up to a certain level of complexity, but it quickly reaches its limitations with increasing complexity. The goal of this approach is to combine both components in a compatible manner. We present TermiCron, a synchronization engine that provides synchronized value sets from TS in MDRs, including versioning and annotations. Prototypical results were shown for the terminology server Ontoserver and two established MDR systems. Bridging the semantic and structural gap between the two infrastructure components, this approach enables shared use of metadata and reuse of corresponding health information by establishing a clear separation of the two systems and thus serves to strengthen reuse as well as to increase quality.},
	language = {eng},
	journal = {Studies in Health Technology and Informatics},
	author = {Wiedekopf, Joshua and Ulrich, Hannes and Drenkhahn, Cora and Kock-Schoppenhauer, Ann-Kristin and Ingenerf, Josef},
	month = jun,
	year = {2022},
	pmid = {35672973},
	keywords = {Delivery of Health Care, HL7 FHIR, Health Facilities, Metadata, Metadata Repository, Secondary Use, Semantics},
	pages = {71--75},
}
[eng] Tessa Ohlsen, Valerie Kruse, Rosemarie Krupar, Alexandra Banach, Josef Ingenerf, and Cora Drenkhahn,
Mapping of ICD-O Tuples to OncoTree Codes Using SNOMED CT Post-Coordination, Studies in Health Technology and Informatics , vol. 294, pp. 307--311, May 2022.
DOI:10.3233/SHTI220464
File: SHTI220464
Bibtex: BibTeX
@article{ohlsen_mapping_2022,
	title = {Mapping of {ICD}-{O} {Tuples} to {OncoTree} {Codes} {Using} {SNOMED} {CT} {Post}-{Coordination}},
	volume = {294},
	issn = {1879-8365},
	url = {https://doi.org/10.3233/SHTI220464},
	doi = {10.3233/SHTI220464},
	abstract = {Around 500,000 oncological diseases are diagnosed in Germany every year which are documented using the International Classification of Diseases for Oncology (ICD-O). Apart from this, another classification for oncology, OncoTree, is often used for the integration of new research findings in oncology. For this purpose, a semi-automatic mapping of ICD-O tuples to OncoTree codes was developed. The implementation uses a FHIR terminology server, pre-coordinated or post-coordinated SNOMED CT expressions, and subsumption testing. Various validations have been applied. The results were compared with reference data of scientific papers and manually evaluated by a senior pathologist, confirming the applicability of SNOMED CT in general and its post-coordinated expressions in particular as a viable intermediate mapping step. Resulting in an agreement of 84,00 \% between the newly developed approach and the manual mapping, it becomes obvious that the present approach has the potential to be used in everyday medical practice.},
	language = {eng},
	journal = {Studies in Health Technology and Informatics},
	author = {Ohlsen, Tessa and Kruse, Valerie and Krupar, Rosemarie and Banach, Alexandra and Ingenerf, Josef and Drenkhahn, Cora},
	month = may,
	year = {2022},
	pmid = {35612082},
	keywords = {Germany, HL7 FHIR, ICD-O, International Classification of Diseases, Medical Oncology, OncoTree, Ontoserver, SNOMED CT, Systematized Nomenclature of Medicine, post-coordination, terminology server},
	pages = {307--311},
}
[eng] Joshua Wiedekopf, Cora Drenkhahn, Lorenz Rosenau, Hannes Ulrich, Ann-Kristin Kock-Schoppenhauer, and Josef Ingenerf,
TerminoDiff - Detecting Semantic Differences in HL7 FHIR CodeSystems, Studies in Health Technology and Informatics , vol. 294, pp. 362--366, May 2022.
DOI:10.3233/SHTI220475
File: SHTI220475
Bibtex: BibTeX
@article{wiedekopf_terminodiff_2022,
	title = {{TerminoDiff} - {Detecting} {Semantic} {Differences} in {HL7} {FHIR} {CodeSystems}},
	volume = {294},
	issn = {1879-8365},
	url = {https://doi.org/10.3233/SHTI220475},
	doi = {10.3233/SHTI220475},
	abstract = {While HL7 FHIR and its terminology package have seen a rapid uptake by the research community, in no small part due to the wide availability of tooling and resources, there are some areas where tool availability is still lacking. In particular, the comparison of terminological resources, which supports the work of terminologists and implementers alike, has not yet been sufficiently addressed. Hence, we present TerminoDiff, an application to semantically compare FHIR R4 CodeSystem resources. Our tool considers differences across all levels required, i.e. metadata and concept differences, as well as differences in the edge graph, and surfaces them in a visually digestible fashion.},
	language = {eng},
	journal = {Studies in Health Technology and Informatics},
	author = {Wiedekopf, Joshua and Drenkhahn, Cora and Rosenau, Lorenz and Ulrich, Hannes and Kock-Schoppenhauer, Ann-Kristin and Ingenerf, Josef},
	month = may,
	year = {2022},
	pmid = {35612097},
	keywords = {Delivery of Health Care, Drug Packaging, Electronic Health Records, HL7 FHIR, Health Information Exchange, Health Level Seven, Metadata, Semantics, Terminology as Topic, Vocabulary},
	pages = {362--366},
}
[eng] Julian Gruendner, Noemi Deppenwiese, Michael Folz, Thomas Köhler, Björn Kroll, Hans-Ulrich Prokosch, Lorenz Rosenau, Mathias Rühle, Marc-Anton Scheidl, Christina Schüttler, Brita Sedlmayr, Alexander Twrdik, Alexander Kiel, and Raphael W. Majeed,
Architecture for a feasibility query portal for distributed COVID-19 Fast Healthcare Interoperability Resources (FHIR) patient data repositories: Design and Implementation Study, JMIR medical informatics , Apr. 2022.
DOI:10.2196/36709
File: 36709
Bibtex: BibTeX
@article{gruendner_architecture_2022,
	title = {Architecture for a feasibility query portal for distributed {COVID}-19 {Fast} {Healthcare} {Interoperability} {Resources} ({FHIR}) patient data repositories: {Design} and {Implementation} {Study}},
	issn = {2291-9694},
	shorttitle = {Architecture for a feasibility query portal for distributed {COVID}-19 {Fast} {Healthcare} {Interoperability} {Resources} ({FHIR}) patient data repositories},
	url = {https://doi.org/10.2196/36709},
	doi = {10.2196/36709},
	abstract = {BACKGROUND: An essential step in any medical research project after having identified the research question is to find out if there are enough patients available for a study and where to find them. Pursuing digital feasibility queries on available patient data registries has proven to be an excellent way of reusing existing real world data sources. To support multicentric research, these feasibility queries should be designed and implemented to run across multiple sites and securely access local data. Working across hospitals usually also means working with different data formats and vocabularies. Recently, the Fast Healthcare Interoperability Resources (FHIR) standard has been developed by HL7 to address this concern and describe patient data in a standardized format. The Medical Informatics Initiative (MII) in Germany has committed to this standard and created Data Integration Centers, which convert existing data into the FHIR format at each hospital. This partially solves the interoperability problem, however a distributed feasibility query platform for the FHIR standard is still missing.
OBJECTIVE: This study describes the design and implementation of the components involved in creating a cross-hospital feasibility query platform for researchers based on FHIR resources. This effort is part of a larger COVID-19 data exchange platform (CODEX) and is designed to be scalable for a broad range of patient data.
METHODS: We analyzed and designed the abstract components necessary for a distributed feasibility query. This included a user interface for creating the query, a backend with an ontology and terminology service, a middleware for query distribution and a FHIR feasibility query execution service.
RESULTS: We implemented the components identified in the methods. The resulting solution was distributed to 33 German university hospitals. The functionality of the comprehensive network infrastructure was demonstrated using a test dataset based on the German Corona Consensus Dataset (GECCO). A performance test using specifically created synthetic data revealed the applicability of our solution to datasets containing millions of FHIR resources. The solution can be easily deployed across the hospitals and supports feasibility queries, combining multiple inclusion and exclusion criteria using standard Health Level Seven (HL7) query languages such as the Clinical Quality Language (CQL) and FHIR Search. Developing a platform based on multiple microservices allowed us to create an extendable platform and support multiple HL7 query languages and middleware components to allow integration with future directions of the Medical Informatics Initiative.
CONCLUSIONS: We designed and implemented a feasibility platform for distributed feasibility queries, which works directly on FHIR formatted data and distributed it across 33 university hospitals in Germany. We showed that developing a feasibility platform directly on the FHIR standard is feasible.
CLINICALTRIAL:},
	language = {eng},
	journal = {JMIR medical informatics},
	author = {Gruendner, Julian and Deppenwiese, Noemi and Folz, Michael and Köhler, Thomas and Kroll, Björn and Prokosch, Hans-Ulrich and Rosenau, Lorenz and Rühle, Mathias and Scheidl, Marc-Anton and Schüttler, Christina and Sedlmayr, Brita and Twrdik, Alexander and Kiel, Alexander and Majeed, Raphael W.},
	month = apr,
	year = {2022},
	pmid = {35486893},
}
[eng] Lorenz Rosenau, Raphael W. Majeed, Josef Ingenerf, Alexander Kiel, Björn Kroll, Thomas Köhler, Hans-Ulrich Prokosch, and Julian Gruendner,
Generation of a Fast Healthcare Interoperability Resources (FHIR)-based Ontology for Federated Feasibility Queries in the Context of COVID-19: Feasibility Study, JMIR medical informatics , vol. 10, no. 4, pp. e35789, Apr. 2022.
DOI:10.2196/35789
File: 35789
Bibtex: BibTeX
@article{rosenau_generation_2022,
	title = {Generation of a {Fast} {Healthcare} {Interoperability} {Resources} ({FHIR})-based {Ontology} for {Federated} {Feasibility} {Queries} in the {Context} of {COVID}-19: {Feasibility} {Study}},
	volume = {10},
	issn = {2291-9694},
	shorttitle = {Generation of a {Fast} {Healthcare} {Interoperability} {Resources} ({FHIR})-based {Ontology} for {Federated} {Feasibility} {Queries} in the {Context} of {COVID}-19},
	url = {https://doi.org/10.2196/35789},
	doi = {10.2196/35789},
	abstract = {BACKGROUND: The COVID-19 pandemic highlighted the importance of making research data from all German hospitals available to scientists to respond to current and future pandemics promptly. The heterogeneous data originating from proprietary systems at hospitals' sites must be harmonized and accessible. The German Corona Consensus Dataset (GECCO) specifies how data for COVID-19 patients will be standardized in Fast Healthcare Interoperability Resources (FHIR) profiles across German hospitals. However, given the complexity of the FHIR standard, the data harmonization is not sufficient to make the data accessible. A simplified visual representation is needed to reduce the technical burden, while allowing feasibility queries.
OBJECTIVE: This study investigates how a search ontology can be automatically generated using FHIR profiles and a terminology server. Furthermore, it describes how this ontology can be used in a user interface (UI) and how a mapping and a terminology tree created together with the ontology can translate user input into FHIR queries.
METHODS: We used the FHIR profiles from the GECCO data set combined with a terminology server to generate an ontology and the required mapping files for the translation. We analyzed the profiles and identified search criteria for the visual representation. In this process, we reduced the complex profiles to code value pairs for improved usability. We enriched our ontology with the necessary information to display it in a UI. We also developed an intermediate query language to transform the queries from the UI to federated FHIR requests. Separation of concerns resulted in discrepancies between the criteria used in the intermediate query format and the target query language. Therefore, a mapping was created to reintroduce all information relevant for creating the query in its target language. Further, we generated a tree representation of the ontology hierarchy, which allows resolving child concepts in the process.
RESULTS: In the scope of this project, 82 (99\%) of 83 elements defined in the GECCO profile were successfully implemented. We verified our solution based on an independently developed test patient. A discrepancy between the test data and the criteria was found in 6 cases due to different versions used to generate the test data and the UI profiles, the support for specific code systems, and the evaluation of postcoordinated Systematized Nomenclature of Medicine (SNOMED) codes. Our results highlight the need for governance mechanisms for version changes, concept mapping between values from different code systems encoding the same concept, and support for different unit dimensions.
CONCLUSIONS: We developed an automatic process to generate ontology and mapping files for FHIR-formatted data. Our tests found that this process works for most of our chosen FHIR profile criteria. The process established here works directly with FHIR profiles and a terminology server, making it extendable to other FHIR profiles and demonstrating that automatic ontology generation on FHIR profiles is feasible.},
	language = {eng},
	number = {4},
	journal = {JMIR medical informatics},
	author = {Rosenau, Lorenz and Majeed, Raphael W. and Ingenerf, Josef and Kiel, Alexander and Kroll, Björn and Köhler, Thomas and Prokosch, Hans-Ulrich and Gruendner, Julian},
	month = apr,
	year = {2022},
        pmid = {35380548},
        pages = {e35789},
}
[en] Lorenz Bastian, Alina M. Hartmann, Thomas Beder, Sonja Hänzelmann, Jan Kässens, Miriam Bultmann, Marc P. Hoeppner, Sören Franzenburg, Michael Wittig, Andre Franke, Inga Nagel, Malte Spielmann, Niklas Reimer, Hauke Busch, Stefan Schwartz, Björn Steffen, Andreas Viardot, Konstanze Döhner, Mustafa Kondakci, Gerald Wulf, Knut Wendelin, Andrea Renzelmann, Alexander Kiani, Heiko Trautmann, Martin Neumann, Nicola Gökbuget, Monika Brüggemann, and Claudia D. Baldus,
UBTF::ATXN7L3 gene fusion defines novel B cell precursor ALL subtype with CDX2 expression and need for intensified treatment, Leukemia , Apr. 2022.
DOI:10.1038/s41375-022-01557-6
File: s41375-022-01557-6
Bibtex: BibTeX
@article{bastian_ubtfatxn7l3_2022,
	title = {{UBTF}::{ATXN7L3} gene fusion defines novel {B} cell precursor {ALL} subtype with {CDX2} expression and need for intensified treatment},
	issn = {0887-6924, 1476-5551},
	shorttitle = {{UBTF}},
	url = {https://www.nature.com/articles/s41375-022-01557-6},
	doi = {10.1038/s41375-022-01557-6},
	language = {en},
	urldate = {2022-04-12},
	journal = {Leukemia},
	author = {Bastian, Lorenz and Hartmann, Alina M. and Beder, Thomas and Hänzelmann, Sonja and Kässens, Jan and Bultmann, Miriam and Hoeppner, Marc P. and Franzenburg, Sören and Wittig, Michael and Franke, Andre and Nagel, Inga and Spielmann, Malte and Reimer, Niklas and Busch, Hauke and Schwartz, Stefan and Steffen, Björn and Viardot, Andreas and Döhner, Konstanze and Kondakci, Mustafa and Wulf, Gerald and Wendelin, Knut and Renzelmann, Andrea and Kiani, Alexander and Trautmann, Heiko and Neumann, Martin and Gökbuget, Nicola and Brüggemann, Monika and Baldus, Claudia D.},
	month = apr,
	year = {2022},
}
[en] Philipp Unberath, Lukas Mahlmeister, Niklas Reimer, Hauke Busch, Melanie Boerries, and Jan Christoph,
Searching of Clinical Trials Made Easier in cBioPortal Using Patients' Genetic and Clinical Profiles, Applied Clinical Informatics , vol. 13, no. 02, pp. 363--369, Mar. 2022.
DOI:10.1055/s-0042-1743560
File: DOI
Bibtex: BibTeX
@article{unberath_searching_2022,
	title = {Searching of {Clinical} {Trials} {Made} {Easier} in {cBioPortal} {Using} {Patients}' {Genetic} and {Clinical} {Profiles}},
	volume = {13},
	issn = {1869-0327},
	url = {http://www.thieme-connect.de/DOI/DOI?10.1055/s-0042-1743560},
	doi = {10.1055/s-0042-1743560},
	abstract = {Abstract
            Background Molecular tumor boards (MTBs) cope with the complexity of an increased usage of genome sequencing data in cancer treatment. As for most of these patients, guideline-based therapy options are exhausted, finding matching clinical trials is crucial. This search process is often performed manually and therefore time consuming and complex due to the heterogeneous and challenging dataset.
            Objectives In this study, a prototype for a search tool was developed to demonstrate how cBioPortal as a clinical and genomic patient data source can be integrated with ClinicalTrials.gov, a database of clinical studies to simplify the search for trials based on genetic and clinical data of a patient. The design of this tool should rest on the specific needs of MTB participants and the architecture of the integration should be as lightweight as possible and should not require manual curation of trial data in advance with the goal of quickly and easily finding a matching study.
            Methods Based on a requirements analysis, interviewing MTB experts, a prototype was developed. It was further refined using a user-centered development process with multiple feedback loops. Finally, the usability of the application was evaluated with user interviews including the thinking-aloud protocol and the system usability scale (SUS) questionnaire.
            Results The integration of ClinicalTrials.gov in cBioPortal is achieved by a new tab in the patient view where the genomic profile for the search is prefilled and additional parameters can be adjusted. These parameters are then used to query the application programming interface (API) of ClinicalTrials.gov. The returned search results subsequently are ranked and presented to the user. The evaluation of the application resulted in an SUS score of 83.5.
            Conclusion This work demonstrates the integration of cBioPortal with ClinicalTrials.gov to use clinical and genomic patient data to search for appropriate trials within an MTB.},
	language = {en},
	number = {02},
	urldate = {2022-03-31},
	journal = {Applied Clinical Informatics},
	author = {Unberath, Philipp and Mahlmeister, Lukas and Reimer, Niklas and Busch, Hauke and Boerries, Melanie and Christoph, Jan},
	month = mar,
	year = {2022},
	pages = {363--369},
}
[en] Kai Vogl, Josef Ingenerf, Jan Kramer, Christine Chantraine, and Cora Drenkhahn,
LUMA: A Mapping Assistant for Standardizing the Units of LOINC-Coded Laboratory Tests, Applied Sciences , vol. 12, no. 12, pp. 5848, Jan. 2022.
DOI:10.3390/app12125848
File: 5848
Bibtex: BibTeX
@article{vogl_luma_2022,
	title = {{LUMA}: {A} {Mapping} {Assistant} for {Standardizing} the {Units} of {LOINC}-{Coded} {Laboratory} {Tests}},
	volume = {12},
	copyright = {http://creativecommons.org/licenses/by/3.0/},
	issn = {2076-3417},
	shorttitle = {{LUMA}},
	url = {https://www.mdpi.com/2076-3417/12/12/5848},
	doi = {10.3390/app12125848},
	abstract = {The coding system Unified Code for Units of Measure (UCUM) serves the unambiguous electronic communication of physical quantities and their measurements and has faced a slow uptake. Despite being closely related to popular healthcare standards such as LOINC, laboratories still majorly report results using proprietary unit terms. Currently available methods helping users create mappings between their units and UCUM are not flexible and automated enough to be of great use in trying to remedy this. We propose the “LOINC to UCUM Mapping Assistant” (LUMA) as a tool able to overcome the drawbacks of existing approaches while being more accessible even to inexperienced users. By mapping LOINC’s Property axis to representations within UCUM reflecting its semantics, we were able to formalize the association between the two. An HL7 FHIR back-end provides LUMA with UCUM unit recommendations sourced from existing lookup tables simply by providing it with a LOINC code. Additionally, the mappings users created may be used to perform unit conversions from proprietary units to UCUM. The tool was evaluated with five participants from the LADR laboratory network in Germany, who valued the streamlined approach to creating the mappings and particularly emphasized the utility of being able to perform unit conversions within the tool.},
	language = {en},
	number = {12},
	urldate = {2022-06-08},
	journal = {Applied Sciences},
	author = {Vogl, Kai and Ingenerf, Josef and Kramer, Jan and Chantraine, Christine and Drenkhahn, Cora},
	month = jan,
	year = {2022},
	note = {Number: 12
Publisher: Multidisciplinary Digital Publishing Institute},
	keywords = {HL7 FHIR, LOINC, RELMA, REST, UCUM, mapping, standardization},
	pages = {5848},
}
Anke Neumann, Ann-Kristin Kock-Schoppenhauer, Desiree Grabow, Diana Walz, Anna-Liesa Filbert, Thorsten Langer, and Josef Ingenerf,
Mapping, modeling and standardization of clinical data into the HL7 FHIR specification for the EU project PanCareSurPass, in Student conference proceedings 2022 , Lübeck: Infinite Science Publishing / Infinite Science Publishing, 2022. pp. 273--276.
ISBN:978-3-945954-67-6
Benjamin Stahr, Sebastian Fudickar, and Christian Lins,
Mobile Applications for Self-management of Chronic Diseases: A Systematic Review, in Proceedings of the 15th {International} {Joint} {Conference} on {Biomedical} {Engineering} {Systems} and {Technologies} , SCITEPRESS - Science and Technology Publications, 2022.
File: 0010846200003123
Hannes Ulrich, Hristina Uzunova, Heinz Handels, and Josef Ingenerf,
Proposal of Semantic Annotation for German Metadata Using Bidirectional Recurrent Neural Networks, Challenges of Trustable AI and Added-Value on Health , pp. 357--361, 2022.
DOI:10.3233/SHTI220474
File: SHTI220474
Bibtex: BibTeX
@article{ulrich_proposal_2022,
	title = {Proposal of {Semantic} {Annotation} for {German} {Metadata} {Using} {Bidirectional} {Recurrent} {Neural} {Networks}},
	url = {https://ebooks.iospress.nl/doi/10.3233/SHTI220474},
	doi = {10.3233/SHTI220474},
	urldate = {2022-08-16},
	journal = {Challenges of Trustable AI and Added-Value on Health},
	author = {Ulrich, Hannes and Uzunova, Hristina and Handels, Heinz and Ingenerf, Josef},
	year = {2022},
	note = {Publisher: IOS Press},
	pages = {357--361},
}
Conrad Fifelski-von Böhlen, Anna Brinkmann, Sebastian Fudickar, Sandra Hellmers, and Andreas Hein,
Technology-Based Education and Training System for Nursing Professionals, in Biomedical {Engineering} {Systems} and {Technologies} , Springer International Publishing, 2022, pp. 120--138.
DOI:10.1007/978-3-031-20664-1_7
File: 978-3-031-20664-1_7
[EN] Hannes Ulrich, Ann-Kristin Kock-Schoppenhauer, Noemi Deppenwiese, Robert Gött, Jori Kern, Martin Lablans, Raphael W. Majeed, Mark R. Stöhr, Jürgen Stausberg, Julian Varghese, Martin Dugas, and Josef Ingenerf,
Understanding the Nature of Metadata: Systematic Review, Journal of Medical Internet Research , vol. 24, no. 1, pp. e25440, Jan. 2022.
DOI:10.2196/25440
File: e25440
Bibtex: BibTeX
@article{ulrich_understanding_2022,
	title = {Understanding the {Nature} of {Metadata}: {Systematic} {Review}},
	volume = {24},
	shorttitle = {Understanding the {Nature} of {Metadata}},
	url = {https://www.jmir.org/2022/1/e25440},
	doi = {10.2196/25440},
	abstract = {Background: Metadata are created to describe the corresponding data in a detailed and unambiguous way and is used for various applications in different research areas, for example, data identification and classification. However, a clear definition of metadata is crucial for further use. Unfortunately, extensive experience with the processing and management of metadata has shown that the term “metadata” and its use is not always unambiguous.
Objective: This study aimed to understand the definition of metadata and the challenges resulting from metadata reuse.
Methods: A systematic literature search was performed in this study following the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines for reporting on systematic reviews. Five research questions were identified to streamline the review process, addressing metadata characteristics, metadata standards, use cases, and problems encountered. This review was preceded by a harmonization process to achieve a general understanding of the terms used.
Results: The harmonization process resulted in a clear set of definitions for metadata processing focusing on data integration. The following literature review was conducted by 10 reviewers with different backgrounds and using the harmonized definitions. This study included 81 peer-reviewed papers from the last decade after applying various filtering steps to identify the most relevant papers. The 5 research questions could be answered, resulting in a broad overview of the standards, use cases, problems, and corresponding solutions for the application of metadata in different research areas.
Conclusions: Metadata can be a powerful tool for identifying, describing, and processing information, but its meaningful creation is costly and challenging. This review process uncovered many standards, use cases, problems, and solutions for dealing with metadata. The presented harmonized definitions and the new schema have the potential to improve the classification and generation of metadata by creating a shared understanding of metadata and its context.},
	language = {EN},
	number = {1},
	urldate = {2022-01-12},
	journal = {Journal of Medical Internet Research},
	author = {Ulrich, Hannes and Kock-Schoppenhauer, Ann-Kristin and Deppenwiese, Noemi and Gött, Robert and Kern, Jori and Lablans, Martin and Majeed, Raphael W. and Stöhr, Mark R. and Stausberg, Jürgen and Varghese, Julian and Dugas, Martin and Ingenerf, Josef},
	month = jan,
	year = {2022},
	note = {Company: Journal of Medical Internet Research
Distributor: Journal of Medical Internet Research
Institution: Journal of Medical Internet Research
Label: Journal of Medical Internet Research
Publisher: JMIR Publications Inc., Toronto, Canada},
	keywords = {Humans, Metadata, Publications, Reference Standards, data classification, data identification, data integration, metadata, metadata definition, systematic review},
	pages = {e25440},
}

2021

S. Fudickar C. Lins,
An evolutionary approach to continuously estimate CPR quality parameters from a wrist-worn inertial sensor, Health and Technology , vol. 12, no. 1, pp. 161--173, Dec. 2021.
DOI:10.1007/s12553-021-00618-7
File: s12553-021-00618-7
Niklas Reimer, Philipp Unberath, Hauke Busch, Melanie Börries, Patrick Metzger, Arsenij Ustjanzew, Christopher Renner, Hans-Ulrich Prokosch, and Jan Christoph,
Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform, in Studies in {Health} {Technology} and {Informatics} , IOS Press, Nov.2021.
DOI:10.3233/SHTI210169
ISBN:978-1-64368-236-5 978-1-64368-237-2
File: SHTI210833
[engl] Alexandra Banach, Hannes Ulrich, Björn Kroll, Alexander Kiel, Josef Ingenerf, and Ann-Kristin Kock-Schoppenhauer,
Benefits of MII Core Dataset and HL7 FHIR-Based Tooling for Automated Recruiting Purposes, Kiel: German Medical Science GMS Publishing House, Sep.2021. pp. DocAbstr. 125.
DOI:10.3205/21gmds027
Bibtex: BibTeX
@inproceedings{banach_benefits_2021,
	address = {Kiel},
	title = {Benefits of {MII} {Core} {Dataset} and {HL7} {FHIR}-{Based} {Tooling} for {Automated} {Recruiting} {Purposes}},
	copyright = {This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 License.},
	doi = {10.3205/21gmds027},
	language = {engl},
	publisher = {German Medical Science GMS Publishing House},
	author = {Banach, Alexandra and Ulrich, Hannes and Kroll, Björn and Kiel, Alexander and Ingenerf, Josef and Kock-Schoppenhauer, Ann-Kristin},
	month = sep,
	year = {2021},
	keywords = {CQL, FHIR, NLP, clinical trials, patient recruitment},
	pages = {DocAbstr. 125},
}
[eng] Hannes Ulrich, Paul Behrend, Joshua Wiedekopf, Cora Drenkhahn, Ann-Kristin Kock-Schoppenhauer, and Josef Ingenerf,
Hands on the Medical Informatics Initiative Core Data Set - Lessons Learned from Converting the MIMIC-IV, Studies in Health Technology and Informatics , vol. 283, pp. 119--126, Sep. 2021.
DOI:10.3233/SHTI210549
Bibtex: BibTeX
@article{ulrich_hands_2021,
	title = {Hands on the {Medical} {Informatics} {Initiative} {Core} {Data} {Set} - {Lessons} {Learned} from {Converting} the {MIMIC}-{IV}},
	volume = {283},
	issn = {1879-8365},
	doi = {10.3233/SHTI210549},
	abstract = {With the steady increase in the connectivity of the healthcare system, new requirements and challenges are emerging. In addition to the seamless exchange of data between service providers on a national level, the local legacy data must also meet the new requirements. For this purpose, the applications used must be tested securely and sufficiently. However, the availability of suitable and realistic test data is not always given. Therefore, this study deals with the creation of test data based on real electronic health record data provided by the Medical Information Mart for Intensive Care (MIMIC-IV) database. In addition to converting the data to the current FHIR R4, conversion to the core data sets of the German Medical Informatics Initiative was also presented and made available. The test data was generated to simulate a legacy data transfer. Moreover, four different FHIR servers were tested for performance. This study is the first step toward comparable test scenarios around shared datasets and promotes comparability among providers on a national level.},
	language = {eng},
	journal = {Studies in Health Technology and Informatics},
	author = {Ulrich, Hannes and Behrend, Paul and Wiedekopf, Joshua and Drenkhahn, Cora and Kock-Schoppenhauer, Ann-Kristin and Ingenerf, Josef},
	month = sep,
	year = {2021},
	pmid = {34545827},
	keywords = {Data Integration, Delivery of Health Care, Electronic Health Records, HL7 FHIR, Information Dissemination, MIMIC-IV, Medical Informatics},
	pages = {119--126},
}